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Looking for the perfect private boat tour in Malta? You are in the right place! I visited Malta and booked the best boat tour to Gozo, Comino, and the Blue Lagoon!
This tour was one of the highlights of my whole trip! Hosted by Outdoor Explorers Malta, it’s good for a group of up to six people! See all the best locations with a private guide!
This post will give you all the information you need to book this incredible half day boat trip tour!
Ready To Book Your Private Boat Tour In Malta?
Don’t have time to read the post? Take my word for it and just book this incredible tour now!

Why you should book a private boat tour in Malta
Why you should book a private charter boat trip in Malta is simple! For one, on this tour, you can devise the itinerary of your dreams! This boat tour was one of the best things I did on my 5 day Malta itinerary.
This boat tour comes with a pre-determined itinerary of the Maltese islands, however, the captain is willing to make alterations to fit your needs!
Also, a private boat tour is much more enjoyable than joining a tour with the masses. If you ever want to imagine you are living on a sailboat, this is a good way to do it!
Not to say I don’t enjoy a group tour, because I do. This tour is great value for the money, the price is for the group, not per person.
I just think a private tour is the best way to see all the hidden gems Malta has to offer! It was an unforgettable experience for me as I hope it is for you!
What are the main islands you visit on the boat tour of Malta?
Malta is made up of three main islands: Malta, Gozo, and Comino. Malta is the largest of these islands and it is where you start your tour of the islands of Malta.
Gozo is known for its lush green landscape, traditional fishing villages, and picturesque bays. The most interesting area to visit in Gozo is the citadel, but more on that later.
Comino is the smallest of the three islands and is a secluded paradise with crystal clear waters, white sandy beaches, and plenty of opportunities for swimming, snorkeling, and kayaking.
All three islands are full of history, culture, archaeological sites, and monuments to explore.
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When is the best time of year for a boat tour in Malta?
The best time to take a boat tour in Malta is during the summer months! I visited Malta in September and the weather conditions were at around 85 degrees Fahrenheit every day!
Typically April to October will be the best with sunny skies, and warm temperatures. Plus there are long hours of daylight which makes it perfect for exploring the coastal areas of the island by boat.
A boat tour day trip is a great way to experience the beauty and culture of Malta. I would never have been able to explore some of the traditional fishing villages, historic ruins, and picturesque bays with crystal-clear waters had I not been on a boat.

Malta Private Boat Tour Itinerary
The private boat trip, operated by Outdoor Explorers Malta, has 9 scheduled stops, some of which include snorkeling!
The tour starts by meeting at Cirkewwa cafe where you will meet your captain and guide. If you want to get creative with this tour, you can make it a one-way trip and be left in Gozo.
Otherwise, it is a roundtrip adventure that brings you back to where you started.
Famous Blue Lagoon

The first stop on this private tour is the ever-so-popular destination, the Blue Lagoon! It happens to be one of the most photogenic and best places I ever visited! Capture memories here with a waterproof camera.
Located off the island of Comino, it is known for its blue grotto. Swimming in these crystal blue waters is such a great experience that I am so grateful for.
The captain will anchor the boat in the perfect place for you to get into the water and swim around. If you are interested in snorkeling the crew will provide you with all the gear you need.
If you don’t feel like going in the crystal blue waters you can always just hang out on the boat and sunbathe!
You will spend around 30 minutes here at the blue lagoon before moving on.
Crystal Lagoon

The second stop is to the turquoise waters of the crystal lagoon off Comino Island! Here is another opportunity for snorkeling and swimming.
The boat will take you closest to the secret caves with sandy beaches inside them! This crystal lagoon cave is also famous for being the set of filming for Troy, Count of Monte Cristo, and Popey!
You will spend around 20 to 30 minutes exploring this incredible slice of paradise before moving on.
Santa Marija Bay
Next sail on to the secluded beach of Santa Marija Bay located north on Comino Island. This white sand horseshoe-shaped beach is surrounded by tamarisk trees. It is the perfect private beach to just chill.
This part of the beautiful bay is filled with marine life, especially parrotfish, around the numerous caves.
The boat will go take you to the surrounding Comino caves before heading off to your next stop.
Cominotto Beach
To reach the secluded Cominotto beach you must go by private boat. Lucky for you this tour will stop here and anchor for a quick swim.
Cominotto Beach is popular for its beautiful, crystal-clear waters and excellent swimming conditions. This private beach is most famous for the movies filmed here such as Troy!
Comminotto Reef
Next, you will pass by numerous sea caves of rock formations just north of the island. The reef here is known for groupers and octopuses.
Saint Mary’s Tower
Next, you will visit Saint Mary’s Tower, also known as the Comino Tower. This is a fortified watchtower with a lot of history in Malta.
The tower was built by an unknown architect and but play a key role to protect the grand harbour from attack.
You may also recognize the tower as the prison in the Count of Monte Cristo movie.
Island of Gozo

Next, cruise to the south coast of the island of Gozo and stop at a secluded bay accessible only by boat.
You will spend around 25 minutes here at the hidden beach. It is the perfect little introduction to one of the most beautiful places of these three islands.
I do urge you to either stay on Gozo island after this tour to fully experience Malta. There is a lot more to see here, but on a half-day trip, this is the best excursion possible.
Qala
You will continue to head southeast on the island of Gozo to check out some of the pebbly beaches and caves at the east point of Gozo.
Hondoq Bay
Next, you will visit the beach on the south coast of Gozo, Hondoq Beach. This stunning beach is adjacent to some magnificent caves leading to some excellent spots for cliff diving!
Mgarr Harbour

One of the last stops on the tour is the bustling port of Mgarr harbour. The harbour has been around since Prehistoric times and served as an important trade hub for the Phoenicians, Romans, and Arabs.
Throughout its history, it has also played an integral role in Malta’s economy as a major port of entry for goods entering the country.
The harbour overlooks a dramatic coastline that includes rugged cliffs, small beautiful bays, and secluded beaches. It is a great place to take part in various water sports activities such as scuba diving, waterskiing, eFoiling, sailing, and kayaking.
If you were going to stay longer in Gozo, this is where the tour would leave you. If not, you will head back to crystal lagoon one more time before returning back to where you started.
What to bring for your Malta boat tour?
For the best experience possible you should make sure you have a few things on the boat.
- Sunblock. This is an obvious one, but an important one! I pack a small bag for all my day trips that include both powered and liquid sunscreen, my favorite brand is Grown Alchemist.
- Sun Hat. The only way I can guarantee that I don’t burn my face is by covering my head with a nice hat. They make hats that have built-in sun blockers.
- Snacks. I always bring my own food, but nothing that would spoil. My go-to is some nuts or crackers. They will have soft drinks on the boat.
- Swim shoes. They make look silly, but they are the best choice to ensure you won’t hurt your feet on any sharp rocks.
- Waterproof iPhone case. This cheap and effective case also has a strap so you won’t drop it in the Mediterranean sea!
Final Thoughts on a private boat cruise in Malta
If you are more than one person, I highly recommend this tour! It will be your best bet to see the majority of these smaller islands in one day.
Getting a private boat rental is another option, but I loved having a private guide to take us all around.
I hope you enjoy the sea adventure to the island of Malta, Gozo & Comino as much as I did!